2. Academic Validation
  3. Integrating in silico and experimental approaches to uncover the anti-apoptotic effects of anhydrosafflor yellow B via JNK/Bid pathway in ischemic stroke

Integrating in silico and experimental approaches to uncover the anti-apoptotic effects of anhydrosafflor yellow B via JNK/Bid pathway in ischemic stroke

  • Brain Res. 2025 Sep 13:1867:149947. doi: 10.1016/j.brainres.2025.149947.
Jie Zhou 1,  Chenxi Zhou 2,  Qianqian Chen 3,  Weifeng Jin 4,  Li Yu 5,  Yangyang Zhang 6
Affiliations

Affiliations

  • 1 The Second School of Clinical Medicine, Zhejiang Chinese Medical University, Hangzhou 310053, China. Electronic address: kujokiton@163.com.
  • 2 The First School of Clinical Medicine, the First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Chinese Medicine), Zhejiang Chinese Medical University, Hangzhou 310053, China. Electronic address: zhouchenxi@zcmu.edu.cn.
  • 3 School of Basic Medical Sciences, Zhejiang Chinese Medical University, Hangzhou 310053, China. Electronic address: cqq2846428966@126.com.
  • 4 School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou 310053, China. Electronic address: jin_weifeng@126.com.
  • 5 School of Basic Medical Sciences, Zhejiang Chinese Medical University, Hangzhou 310053, China. Electronic address: yuli9119@126.com.
  • 6 School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou 310053, China. Electronic address: zyy950909@126.com.
PMID: 40953791 DOI: 10.1016/j.brainres.2025.149947
Abstract

Background and objective: Ischemic stroke (IS) is a major cause of death and disability worldwide. Anhydrosafflor yellow B (AHSYB) has shown neuroprotective potential. This study aimed to investigate its therapeutic mechanisms, focusing on the mitochondrial apoptotic JNK/Bid pathway.

Methods: Network pharmacology was employed to predict candidate AHSYB-IS targets. The potential roles of these targets in biological processes and signaling pathways were explored using GO/KEGG enrichment analysis. A tMCAO model was established, followed by mRNA Sequencing to identify differentially expressed genes (DEGs), with special attention given to genes rescued by AHSYB. Gene set enrichment analysis (GSEA) was performed to explore potential signaling pathways involved in AHSYB's therapeutic effects. Molecular docking was conducted to evaluate the binding affinity of AHSYB with the apoptotic cascade. Finally, an MCAO/R model experimentally confirmed AHSYB's influence on the JNK/Bid pathway.

Results: A total of 67 candidate targets were identified, with enrichment in pathways such as the MAPK signaling pathway and Apoptosis. The PPI network showed that genes such as BCL2, CASP3, and MAPK8 had higher degrees. Further mRNA-seq analysis revealed that the rescued genes in tMCAO mice treated with AHSYB were enriched in biological processes such as the regulation of apoptotic signaling pathway, and KEGG pathways, including the MAPK signaling pathway. Ultimately, based on its role in JNK-mediated mitochondrial Apoptosis, the JNK/Bid pathway was selected for further molecular docking and experimental validation. AHSYB showed a significant binding affinity with critical proteins in this pathway, with molecular binding energy < -5 kcal·mol-1. In vivo experiments demonstrated that AHSYB significantly improved neurological function (p < 0.01), reduced cerebral infarct volume (p < 0.01), and reduced the mRNA and protein levels of key genes in the JNK/Bid pathway in both serum and brain tissue (p < 0.01 or p < 0.05).

Conclusion: AHSYB offers neuroprotection by blocking mitochondrial Apoptosis through the inhibition of key targets in the JNK/Bid pathway.

Keywords

Anhydrosafflor yellow B; Apoptosis; Ischemic stroke; Network pharmacology; mRNA-seq; the JNK/Bid pathway.

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