2. Academic Validation
  3. Chemoproteomics reveals Ailanthone directly binds to PKM2 to inhibit the progression of Hepatocellular carcinoma

Chemoproteomics reveals Ailanthone directly binds to PKM2 to inhibit the progression of Hepatocellular carcinoma

  • Phytomedicine. 2025 Jul 25:143:156886. doi: 10.1016/j.phymed.2025.156886.
Cheng Lin 1,  Yue Wan 1,  Qiang Huo 2,  Dachuan Liu 2,  Xinhua Liu 3,  Hao Liu 4,  Yixuan Zhang 5,  Xiu Cheng 6
Affiliations

Affiliations

  • 1 School of Pharmacy, Bengbu Medical University, 2600, Donghai Avenue, Bengbu, Anhui 233030, China.
  • 2 School of Pharmacy, Bengbu Medical University, 2600, Donghai Avenue, Bengbu, Anhui 233030, China; Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, 2600, Donghai Avenue, Bengbu, Anhui 233030, China.
  • 3 School of Pharmacy, Anhui Medical University, 81, Meishan Road, Hefei, Anhui 230032, China.
  • 4 School of Pharmacy, Bengbu Medical University, 2600, Donghai Avenue, Bengbu, Anhui 233030, China; Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, 2600, Donghai Avenue, Bengbu, Anhui 233030, China. Electronic address: liuhao6886@foxmail.com.
  • 5 School of Pharmacy, Bengbu Medical University, 2600, Donghai Avenue, Bengbu, Anhui 233030, China; Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, 2600, Donghai Avenue, Bengbu, Anhui 233030, China. Electronic address: zhangyixuan@bbmc.edu.cn.
  • 6 School of Pharmacy, Bengbu Medical University, 2600, Donghai Avenue, Bengbu, Anhui 233030, China; Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, 2600, Donghai Avenue, Bengbu, Anhui 233030, China. Electronic address: 0900023@bbmc.edu.cn.
PMID: 40466508 DOI: 10.1016/j.phymed.2025.156886
Abstract

Background: Hepatocellular Carcinoma (HCC) is a widely recognized aggressive tumor, owing primarily to its high recurrence and metastasis risk. On the Other hand, Ailanthone (AIL), a natural plant derivative, has demonstrated diverse pharmacological properties and a capacity to induce cell death among Other mechanisms. Consequently, it could be employed to suppress HCC proliferation. Nonetheless, AIL's precise targets and mechanisms of action in inhibiting HCC cell growth remain unclear, forming the basis of this study.

Purpose: To investigate the role and molecular mechanisms of AIL in inducing SMMC-7721 cell Apoptosis and identify its key action targets.

Methods: First, the potential pathways and targets of AIL-induced cell death were identified via transcriptomics Sequencing analyses. The impact of AIL on HCC cell growth was then evaluated both in vivo and in vitro, with the underlying mechanisms validated further. Finally, molecular docking, Molecular Dynamics (MD) simulation techniques, and Surface Plasmon Resonance (SPR) experiments were employed to elucidate AIL's binding target.

Results: Our findings revealed that AIL could inhibit Pyruvate Kinase M2 (PKM2) expression, thus suppressing the aerobic glycolysis level of HCC cells. Mechanistically, AIL induced SMMC-7721 cell Apoptosis via the PKM2/HSP90/HIF-1α signaling pathway. Furthermore, molecular docking, MD simulation, and SPR experiments confirmed AIL's direct binding to PKM2. Specifically, AIL formed hydrogen bonds with PKM2 residues Lys311B, Leu353B, and Asp354A, accompanied by hydrophobic interactions with Phe26A/B and Leu353B.

Conclusion: By binding directly to PKM2, AIL exerts anti-tumor effects in SMMC-7721 cells, with glycolysis inhibition via PKM2/HSP90/HIF-1α signaling axis suppression as the potential mechanism, which could be leveraged in HCC treatment.

Keywords

Ailanthone; Glycolysis; HIF-1α; HSP90; Hepatocellular carcinoma; Molecular docking; PKM2.

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